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How to access profile registry on System startup

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I have an application which uses psftp to copy some files from a Linux server. (This application is triggering from another UNIX server, - not a matter here, just FYI)

This works fine if there is a logged in session of the user account  in the windows server(in my Windows Server 2008 r2). 

My issue is like, this application won't work if there is no logged in session.

Means, after every reboot, I need to login to the server manually with the same user account application uses.

Found that the issue may be  with the profile registry. This registry is created in HKEY_CURRENT_USER\Software\SimonTatham\PuTTY\SshHostKeys. (Putty registry is created in this location, I think)

Since this registry is created under HKEY_CURRENT_USER, it is not accessible on System startup.

So, I need to know how can I access this registry (HKEY_CURRENT_USER\Software\SimonTatham\PuTTY\SshHostKeys) on the system startup onwards?

Can I include any scripts in System startup scripts (GPO).?

Please help me here asap


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